Save As clears transaction while undirtying (#1471)

* mutation listener adds via transaction manager

Update the TransactingMutationListener to add items to a transaction
using the transactionManager so that they can be properly removed
from the transaction at a later date.

Prevents showing error dialogs during successful save, and also
prevents persisting duplicate objects.

Fixes #1468

platform/core/src/runs/TransactingMutationListener.js

@@ -52,10 +52,7 @@ define([], function () {
                     transactionService.startTransaction();
                 }
 
-                transactionService.addToTransaction(
-                    persistence.persist.bind(persistence),
-                    persistence.refresh.bind(persistence)
-                );
+                persistence.persist();
 
                 if (!wasActive) {
                     transactionService.commit();